ChIP-seq

MACS

GCATemplates

• Ada

MACS homepage

module spider MACS

Model-based Analysis of ChIP-Seq data.

MACS2

GCATemplates available: no

MACS2 homepage

module spider MACS2

Model-based Analysis of ChIP-Seq data.

SICER

GCATemplates

• Ada

SICER homepage

module spider SICER

A clustering approach for identification of enriched domains from histone modification ChIP-Seq data

ChIP-Seq

GCATemplates available: no

ChIP-Seq homepage

module spider ChIP-Seq

The ChIP-Seq software provides methods for the analysis of ChIP-seq data and other types of mass genome annotation data. The most common analysis tasks include positional correlation analysis, peak detection, and genome partitioning into signal-rich and signal-depleted regions.

PeakRanger

GCATemplates available: no

PeakRanger homepage

module spider PeakRanger

A multi-purpose ultrafast peak caller for ChIP Seq data

PeakSplitter

GCATemplates available: no

PeakSplitter homepage

module spider PeakSplitter

Subdivision of ChIP-seq/ChIP-chip regions into discrete signal peaks

BroadPeak

GCATemplates available: no

BroadPeak homepage

module spider BroadPeak

BroadPeak broad peak calling algorithm for diffuse ChIP-seq datasets.