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VMD

Description

VMD is a powerful molecular visualization tool that is very popular for preparation and analysis of biological systems (protiens, nucleic acids, etc.). VMD can be used to animate and analyze the trajectory of molecular dynamics (MD) simulations from both external MD programs and NAMD. NAMD is a fast, parallel, and scalable molecular dynamics program developed in conjunction with VMD.
Homepage: https://www.ks.uiuc.edu/Research/vmd

Access

Running VMD in the Portal

There are a variety of VMD modules supported on Grace.
It is suggested to run VMD using the VMD portal app implemented under Interactive Apps in the Portal.