VMD
Description
VMD is a powerful molecular visualization tool that is very popular for
preparation and analysis of biological systems (protiens, nucleic acids,
etc.). VMD can be used to animate and analyze the trajectory of
molecular dynamics (MD) simulations from both external MD programs and
NAMD. NAMD is a fast, parallel, and scalable molecular dynamics program
developed in conjunction with VMD.
Homepage: https://www.ks.uiuc.edu/Research/vmd
Access
Running VMD in the Portal
There are a variety of VMD modules supported on Grace.
It is suggested to run VMD using the VMD portal app implemented under Interactive
Apps in the
Portal.