Overview

Instructor: Dylan Rodriguez, Tri Minh Pham, Stuti Trivedi

Time: 10:00 am

Location: Zoom session only

Prerequisites: None for Linux primer, Ada/Terra account for Clusters primer.

Course Materials

Materials

The resources are available as downloadable PDF files.

• Introduction to Linux (Primer 2020): PDF
• HPRC Clusters: Ada (Primer 2020): PDF
• HPRC Clusters: Terra (Primer 2020): PDF
• Data Management Practices (Primer 2020): PDF
• SLURM Job Scheduling (Primer 2020): PDF
• Running Jupyter Notebooks on HPRC OOD (Primer 2020): PDF
• Introduction to HPRC, Duo, VPN and Clusters (Primer 2020): PDF

YouTube Playlist

Primer recordings are available on the HPRC YouTube channel

Note: The recordings need to be processed and hence will not be available immediately after the presentation.

Topics

Introduction to Linux using the HPRC Portal
Friday, Sep 25 @ 10am

• Basic commands
• Process and filesystem concepts
• Shell scripts

Using the Terra Cluster
Tuesday, Sep 29 @ 10am

• Basic system information
• Compiling and running programs
• Creating and submitting SLURM batch jobs

Using the Ada Cluster
Wednesday, Sep 30 @ 10am

• Basic system information
• Compiling and running programs
• Creating and submitting LSF batch jobs

Data Management Practices
Friday, Oct 2 @ 10am

• Transfering data to/from Ada/Terra
• Data lifecycle on Ada/Terra
• Data policies on Ada/Terra

Using the SLURM Job Scheduler on Terra Cluster
Tuesday, Oct 6 @ 10am

• Building job files
• Job submission on Terra
• Queues, wait times and job management

Using the LSF Job Scheduler on Ada Cluster
Wednesday, Oct 7 @ 10am

• Building job files
• Job submission on Terra
• Queues, wait times and job management

Running Jupyter Notebook on HPRC Open on Demand (OOD)
Friday, Oct 9 @ 10am

• How to launch the Portal
• How to launch the Notebook in the Portal
• How to use a Jupyter Notebook