HPRC Primers

Overview

Instructor: Dylan Rodriguez, Stuti Trivedi

Time: 10:00 am and 1:00 pm

Location: Zoom session only

Prerequisites: None for Linux primer, Ada/Terra account for Clusters primer.

Course Materials

Materials

The resources are available as downloadable PDF files.

YouTube Playlist

Primer recordings are available on the HPRC YouTube channel

Note: The recordings need to be processed and hence will not be available immediately after the presentation.

Topics

Introduction to Linux using the HPRC Portal
Tuesday, January 26 @ 10am

  • Basic commands
  • Process and filesystem concepts
  • Shell scripts

Introduction to the Terra Cluster
Tuesday, January 26 @ 1pm

  • Basic system information
  • Compiling and running programs
  • Creating and submitting SLURM batch jobs

Data Management Practices
Wednesday, January 27 @ 10am

  • Transfering data to/from Ada/Terra
  • Data lifecycle on Ada/Terra
  • Data policies on Ada/Terra

Using the SLURM Job Scheduler on Terra Cluster
Friday, January 29 @ 10am

  • Building job files
  • Job submission on Terra
  • Queues, wait times and job management

Running Jupyter Notebook on HPRC Open on Demand (OOD)
Wednesday, February 3 @ 10am

  • How to launch the Portal
  • How to launch the Notebook in the Portal
  • How to use a Jupyter Notebook

Introduction to the Ada Cluster
Wednesday, February 3 @ 1pm

  • Basic system information
  • Compiling and running programs
  • Creating and submitting LSF batch jobs

Using the LSF Job Scheduler on Ada Cluster
Friday, February 5 @ 10am

  • Building job files
  • Job submission on Terra
  • Queues, wait times and job management