HPRC Primers
Overview
Instructor: Dylan Rodriguez, Stuti Trivedi
Time: 10:00 am and 1:00 pm
Location: Zoom session only
Prerequisites: None for Linux primer, Ada/Terra account for Clusters primer.
Course Materials
Materials
The resources are available as downloadable PDF files.
- Introduction to Linux: Primer 2020 Primer 2021
- HPRC Clusters: Ada: Primer 2020 Primer 2021
- HPRC Clusters: Terra: Primer 2020 Primer 2021
- Data Management Practices: Primer 2020 Primer 2021
- SLURM Job Scheduling: Primer 2020 Primer 2021
- LSF Job Scheduling: Primer 2020 Primer 2021
- Running Jupyter Notebooks on HPRC OOD: Primer 2020 Primer 2021
- Jupyter Notebook Exercises: Notebook
- Introduction to HPRC, Duo, VPN and Clusters: Primer 2020
YouTube Playlist
Primer recordings are available on the HPRC YouTube channel
Note: The recordings need to be processed and hence will not be available immediately after the presentation.Topics
Introduction to Linux using the HPRC Portal
Tuesday, January 26 @ 10am
- Basic commands
- Process and filesystem concepts
- Shell scripts
Introduction to the Terra Cluster
Tuesday, January 26 @ 1pm
- Basic system information
- Compiling and running programs
- Creating and submitting SLURM batch jobs
Data Management Practices
Wednesday, January 27 @ 10am
- Transfering data to/from Ada/Terra
- Data lifecycle on Ada/Terra
- Data policies on Ada/Terra
Using the SLURM Job Scheduler on Terra Cluster
Friday, January 29 @ 10am
- Building job files
- Job submission on Terra
- Queues, wait times and job management
Running Jupyter Notebook on HPRC Open on Demand (OOD)
Wednesday, February 3 @ 10am
- How to launch the Portal
- How to launch the Notebook in the Portal
- How to use a Jupyter Notebook
Introduction to the Ada Cluster
Wednesday, February 3 @ 1pm
- Basic system information
- Compiling and running programs
- Creating and submitting LSF batch jobs
Using the LSF Job Scheduler on Ada Cluster
Friday, February 5 @ 10am
- Building job files
- Job submission on Terra
- Queues, wait times and job management