HPRC Primers

Overview

Instructor: Dylan Rodriguez, Tri Minh Pham, Stuti Trivedi

Time: 10:00 am

Location: Zoom session only

Prerequisites: None for Linux primer, Ada/Terra account for Clusters primer.

Course Materials

Materials

The resources are available as downloadable PDF files.

  • Introduction to Linux (Primer 2020): PDF
  • HPRC Clusters: Ada (Primer 2020): PDF
  • HPRC Clusters: Terra (Primer 2020): PDF
  • Data Management Practices (Primer 2020): PDF
  • SLURM Job Scheduling (Primer 2020): PDF
  • Running Jupyter Notebooks on HPRC OOD (Primer 2020): PDF
  • Introduction to HPRC, Duo, VPN and Clusters (Primer 2020): PDF

YouTube Playlist

Primer recordings are available on the HPRC YouTube channel

Note: The recordings need to be processed and hence will not be available immediately after the presentation.

Topics

Introduction to Linux using the HPRC Portal
Friday, Sep 25 @ 10am

  • Basic commands
  • Process and filesystem concepts
  • Shell scripts

Using the Terra Cluster
Tuesday, Sep 29 @ 10am

  • Basic system information
  • Compiling and running programs
  • Creating and submitting SLURM batch jobs

Using the Ada Cluster
Wednesday, Sep 30 @ 10am

  • Basic system information
  • Compiling and running programs
  • Creating and submitting LSF batch jobs

Data Management Practices
Friday, Oct 2 @ 10am

  • Transfering data to/from Ada/Terra
  • Data lifecycle on Ada/Terra
  • Data policies on Ada/Terra

Using the SLURM Job Scheduler on Terra Cluster
Tuesday, Oct 6 @ 10am

  • Building job files
  • Job submission on Terra
  • Queues, wait times and job management

Using the LSF Job Scheduler on Ada Cluster
Wednesday, Oct 7 @ 10am

  • Building job files
  • Job submission on Terra
  • Queues, wait times and job management

Running Jupyter Notebook on HPRC Open on Demand (OOD)
Friday, Oct 9 @ 10am

  • How to launch the Portal
  • How to launch the Notebook in the Portal
  • How to use a Jupyter Notebook