Overview

Instructor(s): Shichen Wang

Time: Friday August 7, 2020 — 10:30AM-1:00PM CT

Location: Zoom session only

Prerequisite(s): Current Ada and Terra account

Includes an introduction to genome assembly using data generated by Next Generation Sequencing (NGS) technology, and an example assembly using sample data. It will utilize assembly tools available on the Ada cluster.

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Course Materials

• NGS Assembly (Spring 2020): PDF

Previous Course Materials

• NGS Assembly (Fall 2019): PDF
• NGS Assembly Genome Commands (Fall 2019): TXT
• NGS Assembly Transcriptome Commands (Fall 2019): TXT
• NGS Assembly (Spring 2019): PDF
• NGS Assembly Genome Commands (Spring 2019): PDF
• NGS Assembly Transcriptome Commands (Spring 2019): PDF
• NGS Assembly (Fall 2018): PDF
• NGS Assembly Genome Commands (Fall 2018): PDF
• NGS Assembly Transcriptome Commands (Fall 2018): PDF
• NGS Assembly (Spring 2018): PDF
• NGS Assembly Genome Commands (Spring 2018): TXT
• NGS Assembly Transcriptome Commands (Spring 2018): TXT
• NGS Assembly (Fall 2017): PDF

Participation

During the training, attendees are expected to log in to an HPRC cluster using their own computer and complete the instructor-led examples and exercises.

Agenda

This course focuses, among others, on the following topics:

• Sequencing overview
• Genome and Transcriptome Assembly
• Assembly QC