Searching for the Cure – COVID-19 Classical Molecular Dynamics with NAMD
Instructor: Dr. Lisa M. Perez
Time: Friday, April 17, 10:00AM-12:30PM
Location: Zoom session only
Prerequisites: HPRC account
The presentation slides are available as downloadable PDF files.
- Molecular Dynamics: PDF
This course focuses on the following topics:
- Protein preparation for MD simulations
- Molecular Mechanics
- Molecular Dynamics
- Hands-on exercises using NAMD as applied to COVID-19
This course focuses on the basic concepts behind classical Molecular Dynamics (MD) and its direct application to modeling COVID-19 using NAMD, an open-source scalable molecular dynamics code.