ACES: NGS Metagenomics

Overview

Instructor: Wesley Brashear

Time: Tuesday, October 24, 2023 — 10:00AM-12:30PM CT

Location: online using Zoom

Prerequisites: Current ACCESS ID, basic Linux/Unix skills, and basic familiarity with NGS techniques/terminology

This short course introduces concepts of metagenomics analysis based on data generated by Next Generation Sequencing (NGS) technology using the ACES cluster.

Course Materials

Presentation slides

The presentation slides are available as downloadable PDF files.

  • NGS Metagenomics (Fall 2023): PDF

Previous Semester Materials

  • NGS Metagenomics (Spring 2023): PDF
  • NGS Metagenomics (Fall 2022): PDF
  • NGS Metagenomics (Fall 2019): PDF
  • NGS Metagenomics commands (Fall 2019): TXT
  • NGS Metagenomics job script (Fall 2019): SH
  • NGS Metagenomics (Spring 2019): PDF
  • NGS Metagenomics commands (Spring 2019): PDF
  • NGS Metagenomics (Fall 2018): PDF
  • NGS Metagenomics commands (Fall 2018): txt
  • NGS Metagenomics (Spring 2018): PDF
  • NGS Metagenomics commands (Spring 2018): txt
  • NGS Metagenomics (Fall 2017): PDF

Agenda

This course focuses, among others, on the following topics:

  • Metagenomics data analysis

Note: During the class sessions many aspects of the material will be illustrated live via a login to FASTER/ACES. Attendees are welcome to follow these parts with their own computers.

You are encouraged to contact the HPRC helpdesk with any questions regarding FASTER/ACES.