New pages
- 11:49, 28 March 2022 SW:Snakemake (hist) [781 bytes] Cmdickens (talk | contribs) (Created page with "=== AlphaFold === GCATemplates available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/grace/run_snakemake_6.10.0_bwa_samtools_gra...")
- 12:01, 23 March 2022 FASTER:Batch Documentation (hist) [243 bytes] Emmanueljpreciado (talk | contribs) (Created page with "== Advanced Documentation == This guide only covers the most commonly used options and useful commands. For more information, check the man pages for individual commands or...")
- 12:00, 23 March 2022 FASTER:Batch Queues (hist) [3,833 bytes] Emmanueljpreciado (talk | contribs) (Created page with "==Batch Queues== Upon job submission, '''Slurm''' sends your jobs to appropriate batch queues. These are (software) service stations configured to control the scheduling and d...")
- 12:00, 23 March 2022 FASTER:Batch Job Examples (hist) [6,057 bytes] Emmanueljpreciado (talk | contribs) (Created page with "== Job File Examples == Several examples of Slurm job files for FASTER are listed below. For translating Ada (LSF) job files, the HPRC:Batch_Translation | Batch Job Transla...")
- 11:59, 23 March 2022 FASTER:Batch Job Commands (hist) [1,149 bytes] Emmanueljpreciado (talk | contribs) (Created page with "== Job Monitoring and Control Commands == After a job has been submitted, you may want to check on its progress or cancel it. Below is a list of the most used job monitoring...")
- 11:59, 23 March 2022 FASTER:Batch Job Submissions (hist) [223 bytes] Emmanueljpreciado (talk | contribs) (Created page with "== Job Submission == Once you have your job file ready, it is time to submit your job. You can submit your job to slurm with the following command: [NetID@FASTER1 ~]$ '''sbat...")
- 11:58, 23 March 2022 FASTER:Batch Job Files (hist) [9,923 bytes] Emmanueljpreciado (talk | contribs) (Created page with "== Building Job Files == While not the only method of submitted programs to be executed, job files fulfill the needs of most users. The general idea behind job files follow...")
- 11:58, 23 March 2022 FASTER:Batch Introduction (hist) [797 bytes] Emmanueljpreciado (talk | contribs) (Created page with "== Introduction == The batch system is a load distribution implementation that ensures convenient and fair use of a shared resource. Submitting jobs to a batch system allows...")
- 11:58, 23 March 2022 FASTER:Batch (hist) [394 bytes] Emmanueljpreciado (talk | contribs) (Created page with "<H1>FASTER Batch Processing: Slurm</H1> __TOC__ {{:FASTER:Batch_Introduction | Introduction}} {{:FASTER:Batch_Job_Files | Job Files}} {{:FASTER:Batch_Job_Submissions | Batch...")
- 11:57, 23 March 2022 FASTER:Filesystems and Files (hist) [2,824 bytes] Emmanueljpreciado (talk | contribs) (Created page with "<H1>File Systems, Quotas and File Transfers</H1> __TOC__ ==File Space== Global file space on FASTER is available on all compute and login nodes. It is organized in the two fil...")
- 11:56, 23 March 2022 FASTER:Computing Environment (hist) [4,582 bytes] Emmanueljpreciado (talk | contribs) (Created page with " <H1>Computing Environment</H1> __TOC__ ==Introduction== FASTER is using the '''CentOS 7''' Linux distribution on all nodes. The global file systems (accessible to all nodes)...")
- 11:55, 23 March 2022 FASTER:Access (hist) [875 bytes] Emmanueljpreciado (talk | contribs) (Created page with "<H1>Accessing FASTER</H1> __TOC__ {{:HPRC:SSH_Access | Access Using SSH}} == Detailed Access Information == For more in-depth information on accessing the TAMU HPRC clusters...")
- 11:45, 23 March 2022 Faster (hist) [2,005 bytes] Emmanueljpreciado (talk | contribs) (Created page with "Faster")
- 15:01, 14 March 2022 SW:Parallel (hist) [2,236 bytes] Cmdickens (talk | contribs) (Created page with "=== Parallel === GCATemplates available: no Gnu Parallel - build and execute shell command lines from standard input in parallel Gnu Parallel [https://www.gnu.org/software/p...")
- 16:23, 7 March 2022 SW:SortMeRNA (hist) [473 bytes] Cmdickens (talk | contribs) (Created page with "=== SortMeRNA === GCATemplates available: no SortMeRNA [https://bioinfo.lifl.fr/RNA/sortmerna homepage] Fast filtering, mapping and OTU picking. SortMe...")
- 14:31, 10 February 2022 SW:gpustats (hist) [1,773 bytes] Cmdickens (talk | contribs) (Created page with "=== gpustats === ==== Description ==== gpustats can be used in a job script to monitor GPU resource usage and create a graph image at the end of the job script. It will moni...")
- 21:51, 27 January 2022 SW:OpenMolcas (hist) [3,774 bytes] Karen890 (talk | contribs) (Created page with "=OpenMolcas= __TOC__ ==Description== OpenMolcas is an open source quantum chemistry code that focuses on multiconfigurational approaches, with methods like CASSCF and CASSPT...")
