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Difference between revisions of "Terra:Batch Job Examples"

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(Job File Examples)
(Job File Examples)
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<span style="font-size:120%;">'''Example Job 1:'''</span> A serial job (single core, single node)<br />
 
<span style="font-size:120%;">'''Example Job 1:'''</span> A serial job (single core, single node)<br />
    #!/bin/bash
+
#!/bin/bash
    ##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
+
##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
    #SBATCH --export=NONE        #Do not propagate environment
+
#SBATCH --export=NONE        #Do not propagate environment
    #SBATCH --get-user-env=L    #Replicate login environment
+
#SBATCH --get-user-env=L    #Replicate login environment
   
+
    ##NECESSARY JOB SPECIFICATIONS
+
##NECESSARY JOB SPECIFICATIONS
    #SBATCH -J JobExample1      #Set the job name to "JobExample1"
+
#SBATCH -J JobExample1      #Set the job name to "JobExample1"
    #SBATCH -t 01:30:00          #Set the wall clock limit to 1hr and 30min
+
#SBATCH -t 01:30:00          #Set the wall clock limit to 1hr and 30min
    #SBATCH -N 1                #Request 1 node
+
#SBATCH -N 1                #Request 1 node
    #SBATCH --ntasks-per-node=1  #Request 1 task/core per node
+
#SBATCH --ntasks-per-node=1  #Request 1 task/core per node
    #SBATCH --mem=2560M          #Request 2560MB (2.5GB) per node
+
#SBATCH --mem=2560M          #Request 2560MB (2.5GB) per node
    #SBATCH -o Example1Out.%j    #Send stdout/err to "Example1Out.[jobID]"
+
#SBATCH -o Example1Out.%j    #Send stdout/err to "Example1Out.[jobID]"
   
+
    ##OPTIONAL JOB SPECIFICATIONS
+
##OPTIONAL JOB SPECIFICATIONS
    #SBATCH -A 123456            #Set billing account to 123456
+
#SBATCH -A 123456            #Set billing account to 123456
    #SBATCH --mail-type=ALL      #Send email on all job events
+
#SBATCH --mail-type=ALL      #Send email on all job events
    #SBATCH --mail-user=email_address  #Send all emails to email_address
+
#SBATCH --mail-user=email_address  #Send all emails to email_address
   
+
    #First Executable Line
+
#First Executable Line
  
 
<span style="font-size:120%;">'''Example Job 2:'''</span> A multi core, single node job<br />
 
<span style="font-size:120%;">'''Example Job 2:'''</span> A multi core, single node job<br />
    #!/bin/bash
+
#!/bin/bash
    ##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
+
##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
    #SBATCH --export=NONE        #Do not propagate environment
+
#SBATCH --export=NONE        #Do not propagate environment
    #SBATCH --get-user-env=L    #Replicate login environment
+
#SBATCH --get-user-env=L    #Replicate login environment
   
+
    ##NECESSARY JOB SPECIFICATIONS
+
##NECESSARY JOB SPECIFICATIONS
    #SBATCH -J JobExample2      #Set the job name to "JobExample2"
+
#SBATCH -J JobExample2      #Set the job name to "JobExample2"
    #SBATCH -t 6:30:00          #Set the wall clock limit to 6hr and 30min
+
#SBATCH -t 6:30:00          #Set the wall clock limit to 6hr and 30min
    #SBATCH -N 1                #Request 1 node
+
#SBATCH -N 1                #Request 1 node
    #SBATCH --ntasks-per-node=8  #Request 8 tasks/cores per node
+
#SBATCH --ntasks-per-node=8  #Request 8 tasks/cores per node
    #SBATCH --mem=8192M          #Request 8192MB (8GB) per node  
+
#SBATCH --mem=8192M          #Request 8192MB (8GB) per node  
    #SBATCH -o Example2Out.%j    #Send stdout/err to "Example2Out.[jobID]"
+
#SBATCH -o Example2Out.%j    #Send stdout/err to "Example2Out.[jobID]"  
   
+
    ##OPTIONAL JOB SPECIFICATIONS
+
##OPTIONAL JOB SPECIFICATIONS
    #SBATCH -A 123456            #Set billing account to 123456
+
#SBATCH -A 123456            #Set billing account to 123456
    #SBATCH --mail-type=ALL      #Send email on all job events
+
#SBATCH --mail-type=ALL      #Send email on all job events
    #SBATCH --mail-user=email_address  #Send all emails to email_address
+
#SBATCH --mail-user=email_address  #Send all emails to email_address  
   
+
    #First Executable Line
+
#First Executable Line
  
 
<span style="font-size:120%;">'''Example Job 3:'''</span> A multi core, multi node job<br />
 
<span style="font-size:120%;">'''Example Job 3:'''</span> A multi core, multi node job<br />
    #!/bin/bash
+
#!/bin/bash
    ##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
+
##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
    #SBATCH --export=NONE        #Do not propagate environment
+
#SBATCH --export=NONE        #Do not propagate environment
    #SBATCH --get-user-env=L    #Replicate login environment
+
#SBATCH --get-user-env=L    #Replicate login environment
   
+
    ##NECESSARY JOB SPECIFICATIONS
+
##NECESSARY JOB SPECIFICATIONS
    #SBATCH -J JobExample3      #Set the job name to "JobExample3"
+
#SBATCH -J JobExample3      #Set the job name to "JobExample3"
    #SBATCH -t 1-12:00:00        #Set the wall clock limit to 1 Day and 12hr
+
#SBATCH -t 1-12:00:00        #Set the wall clock limit to 1 Day and 12hr
    #SBATCH -N 4                #Request 4 nodes
+
#SBATCH -N 4                #Request 4 nodes
    #SBATCH --ntasks-per-node=2  #Request 2 tasks/cores per node
+
#SBATCH --ntasks-per-node=2  #Request 2 tasks/cores per node
    #SBATCH --mem=4096M          #Request 4096MB (4GB) per node  
+
#SBATCH --mem=4096M          #Request 4096MB (4GB) per node  
    #SBATCH -o Example3Out.%j    #Send stdout/err to "Example3Out.[jobID]"
+
#SBATCH -o Example3Out.%j    #Send stdout/err to "Example3Out.[jobID]"
   
+
    ##OPTIONAL JOB SPECIFICATIONS
+
##OPTIONAL JOB SPECIFICATIONS
    #SBATCH -A 123456            #Set billing account to 123456
+
#SBATCH -A 123456            #Set billing account to 123456
    #SBATCH --mail-type=ALL      #Send email on all job events
+
#SBATCH --mail-type=ALL      #Send email on all job events
    #SBATCH --mail-user=email_address  #Send all emails to email_address
+
#SBATCH --mail-user=email_address  #Send all emails to email_address
   
+
    #First Executable Line
+
#First Executable Line
  
 
<span style="font-size:120%;">'''Example Job 4:'''</span> A serial GPU job<br />
 
<span style="font-size:120%;">'''Example Job 4:'''</span> A serial GPU job<br />
    #!/bin/bash
+
#!/bin/bash
    ##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
+
##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
    #SBATCH --export=NONE       #Do not propagate environment
+
#SBATCH --export=NONE #Do not propagate environment
    #SBATCH --get-user-env=L     #Replicate login environment
+
#SBATCH --get-user-env=L #Replicate login environment
   
+
    ##NECESSARY JOB SPECIFICATIONS
+
##NECESSARY JOB SPECIFICATIONS
    #SBATCH -J JobExample4       #Set the job name to "JobExample4"
+
#SBATCH -J JobExample4   #Set the job name to "JobExample4"
    #SBATCH -t 01:30:00         #Set the wall clock limit to 1hr and 30min
+
#SBATCH -t 01:30:00   #Set the wall clock limit to 1hr and 30min
    #SBATCH -N 1                 #Request 1 node
+
#SBATCH -N 1     #Request 1 node
    #SBATCH --ntasks-per-node=1  #Request 1 task/core per node
+
#SBATCH --ntasks-per-node=1  #Request 1 task/core per node
    #SBATCH --mem=2560M         #Request 2560MB (2.5GB) per node
+
#SBATCH --mem=2560M   #Request 2560MB (2.5GB) per node
    #SBATCH -o Example4Out.%j   #Send stdout/err to "Example4Out.[jobID]"
+
#SBATCH -o Example4Out.%j #Send stdout/err to "Example4Out.[jobID]"
    #SBATCH --gres=gpu:1         #Request 1 GPU
+
#SBATCH --gres=gpu:1   #Request 1 GPU
    #SBATCH -p gpu               #Request the GPU partition/queue
+
#SBATCH -p gpu     #Request the GPU partition/queue
   
+
    ##OPTIONAL JOB SPECIFICATIONS
+
##OPTIONAL JOB SPECIFICATIONS
    #SBATCH -A 123456           #Set billing account to 123456
+
#SBATCH -A 123456   #Set billing account to 123456
    #SBATCH --mail-type=ALL     #Send email on all job events
+
#SBATCH --mail-type=ALL   #Send email on all job events
    #SBATCH --mail-user=email_address  #Send all emails to email_address
+
#SBATCH --mail-user=email_address  #Send all emails to email_address
   
+
    #First Executable Line
+
#First Executable Line
  
 
See more specialized job files (if available) at the [[SW | HPRC Software page]]
 
See more specialized job files (if available) at the [[SW | HPRC Software page]]
  
 
[[Category: Terra]]
 
[[Category: Terra]]

Revision as of 11:59, 4 January 2017

Job File Examples

Several examples of Slurm job files for Terra are listed below. For translating Ada/LSF job files, the Batch Job Translation Guide provides some reference.

Example Job 1: A serial job (single core, single node)

#!/bin/bash
##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
#SBATCH --export=NONE        #Do not propagate environment
#SBATCH --get-user-env=L     #Replicate login environment

##NECESSARY JOB SPECIFICATIONS
#SBATCH -J JobExample1       #Set the job name to "JobExample1"
#SBATCH -t 01:30:00          #Set the wall clock limit to 1hr and 30min
#SBATCH -N 1                 #Request 1 node
#SBATCH --ntasks-per-node=1  #Request 1 task/core per node
#SBATCH --mem=2560M          #Request 2560MB (2.5GB) per node
#SBATCH -o Example1Out.%j    #Send stdout/err to "Example1Out.[jobID]"

##OPTIONAL JOB SPECIFICATIONS
#SBATCH -A 123456            #Set billing account to 123456
#SBATCH --mail-type=ALL      #Send email on all job events
#SBATCH --mail-user=email_address  #Send all emails to email_address

#First Executable Line

Example Job 2: A multi core, single node job

#!/bin/bash
##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
#SBATCH --export=NONE        #Do not propagate environment
#SBATCH --get-user-env=L     #Replicate login environment

##NECESSARY JOB SPECIFICATIONS
#SBATCH -J JobExample2       #Set the job name to "JobExample2"
#SBATCH -t 6:30:00           #Set the wall clock limit to 6hr and 30min
#SBATCH -N 1                 #Request 1 node
#SBATCH --ntasks-per-node=8  #Request 8 tasks/cores per node
#SBATCH --mem=8192M          #Request 8192MB (8GB) per node 
#SBATCH -o Example2Out.%j    #Send stdout/err to "Example2Out.[jobID]" 

##OPTIONAL JOB SPECIFICATIONS
#SBATCH -A 123456            #Set billing account to 123456
#SBATCH --mail-type=ALL      #Send email on all job events
#SBATCH --mail-user=email_address  #Send all emails to email_address 

#First Executable Line

Example Job 3: A multi core, multi node job

#!/bin/bash
##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
#SBATCH --export=NONE        #Do not propagate environment
#SBATCH --get-user-env=L     #Replicate login environment

##NECESSARY JOB SPECIFICATIONS
#SBATCH -J JobExample3       #Set the job name to "JobExample3"
#SBATCH -t 1-12:00:00        #Set the wall clock limit to 1 Day and 12hr
#SBATCH -N 4                 #Request 4 nodes
#SBATCH --ntasks-per-node=2  #Request 2 tasks/cores per node
#SBATCH --mem=4096M          #Request 4096MB (4GB) per node 
#SBATCH -o Example3Out.%j    #Send stdout/err to "Example3Out.[jobID]"

##OPTIONAL JOB SPECIFICATIONS
#SBATCH -A 123456            #Set billing account to 123456
#SBATCH --mail-type=ALL      #Send email on all job events
#SBATCH --mail-user=email_address  #Send all emails to email_address

#First Executable Line

Example Job 4: A serial GPU job

#!/bin/bash
##ENVIRONMENT SETTINGS; CHANGE WITH CAUTION
#SBATCH --export=NONE  #Do not propagate environment
#SBATCH --get-user-env=L  #Replicate login environment

##NECESSARY JOB SPECIFICATIONS
#SBATCH -J JobExample4    #Set the job name to "JobExample4"
#SBATCH -t 01:30:00    #Set the wall clock limit to 1hr and 30min
#SBATCH -N 1     #Request 1 node
#SBATCH --ntasks-per-node=1  #Request 1 task/core per node
#SBATCH --mem=2560M    #Request 2560MB (2.5GB) per node
#SBATCH -o Example4Out.%j #Send stdout/err to "Example4Out.[jobID]"
#SBATCH --gres=gpu:1   #Request 1 GPU
#SBATCH -p gpu      #Request the GPU partition/queue

##OPTIONAL JOB SPECIFICATIONS
#SBATCH -A 123456   #Set billing account to 123456
#SBATCH --mail-type=ALL   #Send email on all job events
#SBATCH --mail-user=email_address  #Send all emails to email_address

#First Executable Line

See more specialized job files (if available) at the HPRC Software page