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Difference between revisions of "SW:pbalign"

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(pbalign)
(pbalign)
 
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<pre>
 
<pre>
module load pbalign/0.3.1-GCCcore-6.4.0
+
module load SMRT-Link/10.1.0.119588-cli-tools-only
source $EBROOTPBALIGN/setup-env.sh
 
 
</pre>
 
</pre>
  
Also be sure to specify the number of OMP threads. If you are using 20 cores "#BSUB -n 20" then use:
+
Also be sure to specify the number of OMP threads. If you are using 20 cores "#SBATCH --cpus-per-task=28" then use:
  
 
  export OMP_NUM_THREADS=20
 
  export OMP_NUM_THREADS=20
  
 
[[ Category:SW ]] [[ Category: Bioinformatics ]]
 
[[ Category:SW ]] [[ Category: Bioinformatics ]]

Latest revision as of 09:55, 7 October 2021

pbalign

GCATemplates available: ada

pbalign homepage

pbalign maps PacBio reads to reference sequences.

module load SMRT-Link/10.1.0.119588-cli-tools-only

Also be sure to specify the number of OMP threads. If you are using 20 cores "#SBATCH --cpus-per-task=28" then use:

export OMP_NUM_THREADS=20