Difference between revisions of "SW:Zebulon"
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The TAMU License for Zébulon is for Academic Research only. | The TAMU License for Zébulon is for Academic Research only. | ||
| − | ==Loading the | + | ==Loading the Zébulon modules== |
'''Grace Instructions:''' | '''Grace Instructions:''' | ||
| − | List the versions of | + | List the versions of Zébulon installed: |
mla zebulon | mla zebulon | ||
| − | Load a specific ''ZebulonVersion'' to setup your environment to run Zebulon: | + | Load a specific ''ZebulonVersion'' to setup your environment to run Zébulon: |
| + | |||
| + | ml ''ZebulonVersion'' | ||
| + | |||
| + | '''Terra Instructions''': | ||
| + | |||
| + | List the versions of Zébulon installed: | ||
| + | |||
| + | ml spider Zebulon | ||
| + | |||
| + | Finally, load ''NWChemversion'' to setup your environment to run Zébulon: | ||
ml ''ZebulonVersion'' | ml ''ZebulonVersion'' | ||
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#SBATCH --ntasks-per-node=48 # Requests 48 cores per node | #SBATCH --ntasks-per-node=48 # Requests 48 cores per node | ||
#SBATCH --mem=360G # Requests 360GB of memory per node | #SBATCH --mem=360G # Requests 360GB of memory per node | ||
| + | #SBATCH --error=ZebulonJob.job.e%J # Sends stderr to ZebulonJob.job.e[jobID] | ||
| + | #SBATCH --output=ZebulonJob.job.o%J # Sends stdout to ZebulonJob.job.o[jobID]<br \> | ||
| + | ml purge # purge all module | ||
| + | ml ZEBULON/z904 # load the modules for ZEBULON/z904 | ||
| + | ml list # list the modules loaded <br /> | ||
| + | export OMP_NUM_THREADS = $SLURM_NPROCS # set OMP_NUM_THREADS to the number of cores requested above<br /> | ||
| + | Zrun -smp $SLURM_NPROCS calcul.inp > calcul.out # zrun<br /> | ||
| + | exit # exit when the job is done <br /> | ||
| + | |||
| + | To submit the job to the queue, use the following command: | ||
| + | |||
| + | [ NetID@Grace ~]$ '''sbatch ''jobscript''''' | ||
| + | |||
| + | ===Terra Example Job file=== | ||
| + | A multicore (28 cores per node) example: (Updated Jun. 29, 2021) | ||
| + | #!/bin/bash | ||
| + | ##NECESSARY JOB SPECIFICATIONS | ||
| + | #SBATCH --job-name=ZebulonJob # Sets the job name to ZebulonJob | ||
| + | #SBATCH --time=2:00:00 # Sets the runtime limit to 2 hr | ||
| + | #SBATCH --ntasks=28 # Requests 28 cores | ||
| + | #SBATCH --ntasks-per-node=28 # Requests 28 cores per node | ||
| + | #SBATCH --mem=56G # Requests 56GB of memory per node | ||
#SBATCH --error=ZebulonJob.job.e%J # Sends stderr to ZebulonJob.job.e[jobID] | #SBATCH --error=ZebulonJob.job.e%J # Sends stderr to ZebulonJob.job.e[jobID] | ||
#SBATCH --output=ZebulonJob.job.o%J # Sends stdout to ZebulonJob.job.o[jobID]<br \> | #SBATCH --output=ZebulonJob.job.o%J # Sends stdout to ZebulonJob.job.o[jobID]<br \> | ||
Latest revision as of 14:51, 29 June 2021
Zébulon
Contents
Description
Zébulon is a non-linear finite element solver of the Z-set suite which addresses the whole range of problems arising in structural mechanics. It is jointly developed by École des Mines ParisTech (France), Onera – the French Aerospace Lab, and NW Numerics & Moldeling, Inc (USA). Zebulon may use multi-threading to accelerate material integration and linear system resolution on a single shared memory machine.
For more information, visit the Zébulon Official Website.
The TAMU License for Zébulon is for Academic Research only.
Loading the Zébulon modules
Grace Instructions:
List the versions of Zébulon installed:
mla zebulon
Load a specific ZebulonVersion to setup your environment to run Zébulon:
ml ZebulonVersion
Terra Instructions:
List the versions of Zébulon installed:
ml spider Zebulon
Finally, load NWChemversion to setup your environment to run Zébulon:
ml ZebulonVersion
Grace Example Job file
A multicore (48 cores per node) example: (Updated Jun. 5, 2021)
#!/bin/bash ##NECESSARY JOB SPECIFICATIONS #SBATCH --job-name=ZebulonJob # Sets the job name to ZebulonJob #SBATCH --time=2:00:00 # Sets the runtime limit to 2 hr #SBATCH --ntasks=48 # Requests 48 cores #SBATCH --ntasks-per-node=48 # Requests 48 cores per node #SBATCH --mem=360G # Requests 360GB of memory per node #SBATCH --error=ZebulonJob.job.e%J # Sends stderr to ZebulonJob.job.e[jobID] #SBATCH --output=ZebulonJob.job.o%J # Sends stdout to ZebulonJob.job.o[jobID]
ml purge # purge all module ml ZEBULON/z904 # load the modules for ZEBULON/z904 ml list # list the modules loaded
export OMP_NUM_THREADS = $SLURM_NPROCS # set OMP_NUM_THREADS to the number of cores requested above
Zrun -smp $SLURM_NPROCS calcul.inp > calcul.out # zrun
exit # exit when the job is done
To submit the job to the queue, use the following command:
[ NetID@Grace ~]$ sbatch jobscript
Terra Example Job file
A multicore (28 cores per node) example: (Updated Jun. 29, 2021)
#!/bin/bash ##NECESSARY JOB SPECIFICATIONS #SBATCH --job-name=ZebulonJob # Sets the job name to ZebulonJob #SBATCH --time=2:00:00 # Sets the runtime limit to 2 hr #SBATCH --ntasks=28 # Requests 28 cores #SBATCH --ntasks-per-node=28 # Requests 28 cores per node #SBATCH --mem=56G # Requests 56GB of memory per node #SBATCH --error=ZebulonJob.job.e%J # Sends stderr to ZebulonJob.job.e[jobID] #SBATCH --output=ZebulonJob.job.o%J # Sends stdout to ZebulonJob.job.o[jobID]
ml purge # purge all module ml ZEBULON/z904 # load the modules for ZEBULON/z904 ml list # list the modules loaded
export OMP_NUM_THREADS = $SLURM_NPROCS # set OMP_NUM_THREADS to the number of cores requested above
Zrun -smp $SLURM_NPROCS calcul.inp > calcul.out # zrun
exit # exit when the job is done
To submit the job to the queue, use the following command:
[ NetID@Grace ~]$ sbatch jobscript
