Difference between revisions of "SW:Platypus"
(Created page with "== Platypus == GCATemplates available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/grace/run_platypus_0.1.9_callvariants_grace.sh...") |
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| − | == Platypus == | + | === Platypus === |
[[SW:GCATemplates|GCATemplates]] available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/grace/run_platypus_0.1.9_callvariants_grace.sh grace] | [[SW:GCATemplates|GCATemplates]] available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/grace/run_platypus_0.1.9_callvariants_grace.sh grace] | ||
module spider Platypus | module spider Platypus | ||
| − | Platypus [https://www.rdm.ox.ac.uk/research/lunter-group/lunter-group/platypus-a-haplotype-based-variant-caller-for-next-generation-sequence-data homepage] | + | Platypus [https://www.rdm.ox.ac.uk/research/lunter-group/lunter-group/platypus-a-haplotype-based-variant-caller-for-next-generation-sequence-data homepage] [https://github.com/andyrimmer/Platypus github page] |
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect SNPs, MNPs, short indels, replacements and (using the assembly option) deletions up to several kb. | Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect SNPs, MNPs, short indels, replacements and (using the assembly option) deletions up to several kb. | ||
[[ Category:SW ]] [[ Category: Bioinformatics ]] | [[ Category:SW ]] [[ Category: Bioinformatics ]] | ||
Latest revision as of 10:40, 13 October 2021
Platypus
GCATemplates available: grace
module spider Platypus
Platypus homepage github page
Platypus is a tool designed for efficient and accurate variant-detection in high-throughput sequencing data. By using local realignment of reads and local assembly it achieves both high sensitivity and high specificity. Platypus can detect SNPs, MNPs, short indels, replacements and (using the assembly option) deletions up to several kb.
