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(Created page with "=== Delly === GCATemplates available: no Delly [https://github.com/dellytools/delly homepage] Delly is an integrated structural variant (SV) prediction m...")
 
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=== Delly ===
 
=== Delly ===
[[SW:GCATemplates|GCATemplates]] available: no
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[[SW:GCATemplates|GCATemplates]] available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/ada/run_bwa_delly_0.8.1_pe_call_ada.sh ada]
  
 
Delly [https://github.com/dellytools/delly homepage]
 
Delly [https://github.com/dellytools/delly homepage]

Revision as of 13:53, 25 April 2019

Delly

GCATemplates available: ada

Delly homepage

Delly is an integrated structural variant (SV) prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends, split-reads and read-depth to sensitively and accurately delineate genomic rearrangements throughout the genome. Structural variants can be visualized using Delly-maze and Delly-suave.

module load Delly/0.8.1-intel-2018b

Delly primarily parallelizes on the sample level. Hence, OMP_NUM_THREADS should be always smaller or equal to the number of input samples.

If you have 5 samples, for example, you would use the following in your job script along with the appropriate #BSUB values:

export OMP_NUM_THREADS=5