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SW:ABySS

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Revision as of 16:28, 18 December 2018 by Cmdickens (talk | contribs) (Created page with "=== ABySS === GCATemplates available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/ada/run_abyss_1.9.0_pe_ada.sh yes] [https://git...")
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ABySS

GCATemplates available: yes yes

ABySS homepage

 module load ABySS/1.9.0-intel-2015B-Python-2.7.10-maxk256

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads.

The single-processor version is useful for assembling genomes up to 100 Mbases in size.

The parallel version is implemented using MPI and is capable of assembling larger genomes.

The other ABySS 1.9.0 modules are configured with a maxk of 128.