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Difference between revisions of "SW:ABySS"

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(ABySS)
(ABySS)
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The latest versions of ABySS are listed below:
 
The latest versions of ABySS are listed below:
  ABySS/1.9.0-intel-2015B-Python-2.7.10-maxk256
 
 
   ABySS/1.9.0-intel-2015B-Python-2.7.10
 
   ABySS/1.9.0-intel-2015B-Python-2.7.10
 
   ABySS/2.0.2-foss-2018a
 
   ABySS/2.0.2-foss-2018a
 
   ABySS/2.0.2-gompi-2019a
 
   ABySS/2.0.2-gompi-2019a
  ABySS/2.0.3-foss-2017b
 
 
   ABySS/2.0.3-intel-2017b
 
   ABySS/2.0.3-intel-2017b
  

Revision as of 13:13, 27 February 2020

ABySS

GCATemplates available: ada (pe) ada (pe+mp)

ABySS homepage

 module load ABySS/1.9.0-intel-2015B-Python-2.7.10-maxk256

The latest versions of ABySS are listed below:

 ABySS/1.9.0-intel-2015B-Python-2.7.10
 ABySS/2.0.2-foss-2018a
 ABySS/2.0.2-gompi-2019a
 ABySS/2.0.3-intel-2017b

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads.

The single-processor version is useful for assembling genomes up to 100 Mbases in size.

The parallel version is implemented using MPI and is capable of assembling larger genomes.

The other ABySS 1.9.0 modules are configured with a maxk of 128.