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(Created page with "=== ABySS === GCATemplates available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/ada/run_abyss_1.9.0_pe_ada.sh yes] [https://git...")
 
(ABySS)
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=== ABySS ===
 
=== ABySS ===
[[SW:GCATemplates|GCATemplates]] available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/ada/run_abyss_1.9.0_pe_ada.sh yes] [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/ada/run_abyss_1.9.0_pe_mp_ada.sh yes]
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[[SW:GCATemplates|GCATemplates]] available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/ada/run_abyss_1.9.0_pe_ada.sh ada (pe)] [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/ada/run_abyss_1.9.0_pe_mp_ada.sh ada (pe+mp)]
  
 
ABySS [http://www.bcgsc.ca/platform/bioinfo/software/abyss homepage]
 
ABySS [http://www.bcgsc.ca/platform/bioinfo/software/abyss homepage]

Revision as of 16:29, 9 January 2019

ABySS

GCATemplates available: ada (pe) ada (pe+mp)

ABySS homepage

 module load ABySS/1.9.0-intel-2015B-Python-2.7.10-maxk256

ABySS is a de novo, parallel, paired-end sequence assembler that is designed for short reads.

The single-processor version is useful for assembling genomes up to 100 Mbases in size.

The parallel version is implemented using MPI and is capable of assembling larger genomes.

The other ABySS 1.9.0 modules are configured with a maxk of 128.