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SW:AAF

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Revision as of 14:57, 18 December 2018 by Cmdickens (talk | contribs) (Created page with "== AAF == GCATemplates available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/ada/run_aaf_20160518_ada.sh yes] AAF [https://sour...")
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AAF

GCATemplates available: yes

AAF homepage

 module spider AAF

AAF (alignment and assembly-free) is a free software package that reconstructs phylogeny from next-generation sequencing data without assembly and alignment.

It takes raw sequencing reads from each sample altogether and generates a distance matrix based on the proportion of shared k-mers between each sample and reconstruct a phylogeny based on the distance matrix.