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SW:AAF

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AAF

GCATemplates available: ada

AAF homepage

 module spider AAF

The latest version is listed below:

 AAF/20160518-intel-2015B
 AAF/20171001-intel-2017A-Python-2.7.12

AAF (alignment and assembly-free) is a free software package that reconstructs phylogeny from next-generation sequencing data without assembly and alignment.

It takes raw sequencing reads from each sample altogether and generates a distance matrix based on the proportion of shared k-mers between each sample and reconstruct a phylogeny based on the distance matrix.