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Difference between revisions of "SW:AAF"

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AAF [https://sourceforge.net/projects/aaf-phylogeny/ homepage]
 
AAF [https://sourceforge.net/projects/aaf-phylogeny/ homepage]
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Use the module spider command to see the available versions of AAF:
  
 
   module spider AAF
 
   module spider AAF
 
The latest version of AAF are listed below:
 
  AAF/20171001-intel-2017A-Python-2.7.12
 
  
 
AAF (alignment and assembly-free) is a free software package that reconstructs phylogeny from next-generation sequencing data without assembly and alignment.  
 
AAF (alignment and assembly-free) is a free software package that reconstructs phylogeny from next-generation sequencing data without assembly and alignment.  

Revision as of 14:18, 2 March 2020

AAF

GCATemplates available: ada

AAF homepage

Use the module spider command to see the available versions of AAF:

 module spider AAF

AAF (alignment and assembly-free) is a free software package that reconstructs phylogeny from next-generation sequencing data without assembly and alignment.

It takes raw sequencing reads from each sample altogether and generates a distance matrix based on the proportion of shared k-mers between each sample and reconstruct a phylogeny based on the distance matrix.