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Difference between revisions of "SW:AAF"

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(AAF)
(AAF)
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   AAF/20160518-intel-2015B
 
   AAF/20160518-intel-2015B
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  AAF/20171001-intel-2017A-Python-2.7.12
  
 
AAF (alignment and assembly-free) is a free software package that reconstructs phylogeny from next-generation sequencing data without assembly and alignment.  
 
AAF (alignment and assembly-free) is a free software package that reconstructs phylogeny from next-generation sequencing data without assembly and alignment.  

Revision as of 11:47, 27 February 2020

AAF

GCATemplates available: ada

AAF homepage

 module spider AAF

The latest version is listed below:

 AAF/20160518-intel-2015B
 AAF/20171001-intel-2017A-Python-2.7.12

AAF (alignment and assembly-free) is a free software package that reconstructs phylogeny from next-generation sequencing data without assembly and alignment.

It takes raw sequencing reads from each sample altogether and generates a distance matrix based on the proportion of shared k-mers between each sample and reconstruct a phylogeny based on the distance matrix.