Hprc banner tamu.png

Difference between revisions of "SW:AAF"

From TAMU HPRC
Jump to: navigation, search
(Created page with "== AAF == GCATemplates available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/ada/run_aaf_20160518_ada.sh yes] AAF [https://sour...")
 
(AAF)
Line 1: Line 1:
 
== AAF ==
 
== AAF ==
[[SW:GCATemplates|GCATemplates]] available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/ada/run_aaf_20160518_ada.sh yes]
+
[[SW:GCATemplates|GCATemplates]] available: [https://github.tamu.edu/cmdickens/GCATemplates/blob/master/templates/ada/run_aaf_20160518_ada.sh ada]
  
 
AAF [https://sourceforge.net/projects/aaf-phylogeny/ homepage]
 
AAF [https://sourceforge.net/projects/aaf-phylogeny/ homepage]

Revision as of 16:50, 9 January 2019

AAF

GCATemplates available: ada

AAF homepage

 module spider AAF

AAF (alignment and assembly-free) is a free software package that reconstructs phylogeny from next-generation sequencing data without assembly and alignment.

It takes raw sequencing reads from each sample altogether and generates a distance matrix based on the proportion of shared k-mers between each sample and reconstruct a phylogeny based on the distance matrix.