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Difference between revisions of "Bioinformatics:Licenses"

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(NGS Tool Licences)
(Commercial license required)
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* [https://www.baseclear.com/genomics/bioinformatics/basetools/gapfiller GapFiller, SSPACE-STANDARD, SSPACE-LongRead]
 
* [https://www.baseclear.com/genomics/bioinformatics/basetools/gapfiller GapFiller, SSPACE-STANDARD, SSPACE-LongRead]
 
* [http://topaz.gatech.edu/Genemark/license_download.cgi GeneMarkS, GeneMark-ES/ET]
 
* [http://topaz.gatech.edu/Genemark/license_download.cgi GeneMarkS, GeneMark-ES/ET]
** MAKER: Incorporates the [http://topaz.gatech.edu/Genemark/license_download.cgi GeneMarkS, GeneMark-ES/ET] tools.
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** '''MAKER''' incorporates the [http://topaz.gatech.edu/Genemark/license_download.cgi GeneMarkS, GeneMark-ES/ET] tools.
 
* [http://www.well.ox.ac.uk/~gerton/README.txt Stampy]
 
* [http://www.well.ox.ac.uk/~gerton/README.txt Stampy]
 
* [https://www.h-its.org/en/research/sco/software/#NextGenerationSequencingSequenceAnalysis PEAR]
 
* [https://www.h-its.org/en/research/sco/software/#NextGenerationSequencingSequenceAnalysis PEAR]
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* [http://www.phrap.org/consed/academic_agreement.txt Phrap]
 +
** '''RepeatMasker''' incorporates the cross_match tool which is part of the phred/phrap package
  
 
== Free but no re-distribution of the binary permitted ==
 
== Free but no re-distribution of the binary permitted ==

Revision as of 11:16, 2 January 2018

NGS Tool Licences

Commercial license required

Bioinformatics Tools that are free for Academic users but require a license for Commercial users.

Free but no re-distribution of the binary permitted

Bioinformatics Tools that are free for all users but do not allow copying of the binary.

  • USEARCH The 32-bit version of USEARCH is licensed at no charge for individual use. The license allows commercial use, but does not allow re-distribution of the binary. The 32-bit version is the only version installed on Ada.
    • Qiime: Incorporates the USEARCH tool.


Free alternatives to non-free licensed tools

  • VSEARCH is an open source alternative to USEARCH