Difference between revisions of "Bioinformatics:Licenses"
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= NGS Tool Licences = | = NGS Tool Licences = | ||
| − | + | [https://hprc.tamu.edu/wiki/Bioinformatics Back to Bioinformatics Main Menu] | |
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== Commercial license required == | == Commercial license required == | ||
Bioinformatics Tools that are free for Academic users but require a license for Commercial users. | Bioinformatics Tools that are free for Academic users but require a license for Commercial users. | ||
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* [https://www.baseclear.com/genomics/bioinformatics/basetools/gapfiller GapFiller, SSPACE-STANDARD, SSPACE-LongRead] | * [https://www.baseclear.com/genomics/bioinformatics/basetools/gapfiller GapFiller, SSPACE-STANDARD, SSPACE-LongRead] | ||
* [http://topaz.gatech.edu/Genemark/license_download.cgi GeneMarkS, GeneMark-ES/ET] | * [http://topaz.gatech.edu/Genemark/license_download.cgi GeneMarkS, GeneMark-ES/ET] | ||
| − | ** MAKER | + | * [https://zhanggroup.org/I-TASSER/download/ I-TASSER] |
| + | * [http://www.yandell-lab.org/software/maker.html MAKER] which also incorporates the [http://topaz.gatech.edu/Genemark/license_download.cgi GeneMarkS, GeneMark-ES/ET] tools. | ||
* [http://www.well.ox.ac.uk/~gerton/README.txt Stampy] | * [http://www.well.ox.ac.uk/~gerton/README.txt Stampy] | ||
| + | * [http://phobius.sbc.su.se/ Phobius] | ||
| + | * [https://www.h-its.org/en/research/sco/software/#NextGenerationSequencingSequenceAnalysis PEAR] | ||
| + | * [https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html#download SHAPEIT] | ||
| + | * [http://www.phrap.org/consed/academic_agreement.txt Phrap] | ||
| + | * [http://unafold.rna.albany.edu/?q=DINAMelt/OligoArrayAux OligoArrayAux] | ||
| + | * [https://realphy.unibas.ch/realphy REALPHY] | ||
| + | * [https://zdock.umassmed.edu/software ZDOCK] | ||
| + | ** '''RepeatMasker''' incorporates the cross_match tool which is part of the phred/phrap package | ||
== Free but no re-distribution of the binary permitted == | == Free but no re-distribution of the binary permitted == | ||
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* [https://github.com/torognes/vsearch VSEARCH] is an open source alternative to USEARCH | * [https://github.com/torognes/vsearch VSEARCH] is an open source alternative to USEARCH | ||
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| + | [[ Category:Ada ]] [[ Category:Ada:NGS ]] | ||
Latest revision as of 11:03, 8 October 2021
NGS Tool Licences
Back to Bioinformatics Main Menu
Contents
Commercial license required
Bioinformatics Tools that are free for Academic users but require a license for Commercial users.
- GATK
- ABySS
- BLAT, UCSC-Toolkit
- GapFiller, SSPACE-STANDARD, SSPACE-LongRead
- GeneMarkS, GeneMark-ES/ET
- I-TASSER
- MAKER which also incorporates the GeneMarkS, GeneMark-ES/ET tools.
- Stampy
- Phobius
- PEAR
- SHAPEIT
- Phrap
- OligoArrayAux
- REALPHY
- ZDOCK
- RepeatMasker incorporates the cross_match tool which is part of the phred/phrap package
Free but no re-distribution of the binary permitted
Bioinformatics Tools that are free for all users but do not allow copying of the binary.
- USEARCH The 32-bit version of USEARCH is licensed at no charge for individual use. The license allows commercial use, but does not allow re-distribution of the binary. The 32-bit version is the only version installed on Ada.
- Qiime: Incorporates the USEARCH tool.
Free alternatives to non-free licensed tools
- VSEARCH is an open source alternative to USEARCH
