Hprc banner tamu.png

Difference between revisions of "Bioinformatics:Licenses"

From TAMU HPRC
Jump to: navigation, search
(Commercial license required)
 
(12 intermediate revisions by 2 users not shown)
Line 1: Line 1:
 
= NGS Tool Licences =
 
= NGS Tool Licences =
 
+
[https://hprc.tamu.edu/wiki/Bioinformatics Back to Bioinformatics Main Menu]
 +
__TOC__
 
== Commercial license required ==
 
== Commercial license required ==
 
Bioinformatics Tools that are free for Academic users but require a license for Commercial users.
 
Bioinformatics Tools that are free for Academic users but require a license for Commercial users.
Line 9: Line 10:
 
* [https://www.baseclear.com/genomics/bioinformatics/basetools/gapfiller GapFiller, SSPACE-STANDARD, SSPACE-LongRead]
 
* [https://www.baseclear.com/genomics/bioinformatics/basetools/gapfiller GapFiller, SSPACE-STANDARD, SSPACE-LongRead]
 
* [http://topaz.gatech.edu/Genemark/license_download.cgi GeneMarkS, GeneMark-ES/ET]
 
* [http://topaz.gatech.edu/Genemark/license_download.cgi GeneMarkS, GeneMark-ES/ET]
** MAKER: Incorporates the [http://topaz.gatech.edu/Genemark/license_download.cgi GeneMarkS, GeneMark-ES/ET] tools.
+
* [https://zhanggroup.org/I-TASSER/download/ I-TASSER]
 +
* [http://www.yandell-lab.org/software/maker.html MAKER] which also incorporates the [http://topaz.gatech.edu/Genemark/license_download.cgi GeneMarkS, GeneMark-ES/ET] tools.
 
* [http://www.well.ox.ac.uk/~gerton/README.txt Stampy]
 
* [http://www.well.ox.ac.uk/~gerton/README.txt Stampy]
 +
* [http://phobius.sbc.su.se/ Phobius]
 +
* [https://www.h-its.org/en/research/sco/software/#NextGenerationSequencingSequenceAnalysis PEAR]
 +
* [https://mathgen.stats.ox.ac.uk/genetics_software/shapeit/shapeit.html#download SHAPEIT]
 +
* [http://www.phrap.org/consed/academic_agreement.txt Phrap]
 +
* [http://unafold.rna.albany.edu/?q=DINAMelt/OligoArrayAux OligoArrayAux]
 +
* [https://realphy.unibas.ch/realphy REALPHY]
 +
* [https://zdock.umassmed.edu/software ZDOCK]
 +
** '''RepeatMasker''' incorporates the cross_match tool which is part of the phred/phrap package
  
 
== Free but no re-distribution of the binary permitted ==
 
== Free but no re-distribution of the binary permitted ==
Line 22: Line 32:
  
 
* [https://github.com/torognes/vsearch VSEARCH] is an open source alternative to USEARCH
 
* [https://github.com/torognes/vsearch VSEARCH] is an open source alternative to USEARCH
 +
 +
 +
[[ Category:Ada ]] [[ Category:Ada:NGS ]]

Latest revision as of 10:03, 8 October 2021

NGS Tool Licences

Back to Bioinformatics Main Menu

Commercial license required

Bioinformatics Tools that are free for Academic users but require a license for Commercial users.

Free but no re-distribution of the binary permitted

Bioinformatics Tools that are free for all users but do not allow copying of the binary.

  • USEARCH The 32-bit version of USEARCH is licensed at no charge for individual use. The license allows commercial use, but does not allow re-distribution of the binary. The 32-bit version is the only version installed on Ada.
    • Qiime: Incorporates the USEARCH tool.


Free alternatives to non-free licensed tools

  • VSEARCH is an open source alternative to USEARCH