Difference between revisions of "Bioinformatics:Data Normalization.2C Clustering .26 Collapsing"
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= Data Normalization, Clustering & Collapsing = | = Data Normalization, Clustering & Collapsing = | ||
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| + | {{:SW:BBNorm}} | ||
| + | {{:SW:CD-HIT}} | ||
| + | {{:SW:FASTX-Toolkit}} | ||
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Latest revision as of 12:32, 3 December 2021
Data Normalization, Clustering & Collapsing
Back to Bioinformatics Main Menu
BBNorm
GCATemplates available: no
BBNorm homepage
module spider BBMap
bbnorm.sh is the data normalization script that is part of the BBMap package.
BBNorm: Kmer-based error-correction and normalization tool.
CD-HIT
GCATemplates available: no
CD-HIT homepage
module spider CD-HIT
CD-HIT is a very widely used program for clustering and comparing protein or nucleotide sequences.
FASTX-Toolkit
GCATemplates available: no
FASTX-Toolkit homepage
module spider FASTX-Toolkit
The fastx_collapser tool is included in the FASTX-Toolkit.
Collapses identical sequences in a FASTQ/A file into a single sequence (while maintaining reads counts).
