|
|
| Line 1: |
Line 1: |
| − | {{WelcomeBanner}}
| |
| − | <!--Main page of Wiki: top level pages for all clusters and HPRC material are shown here.-->
| |
| − | <!-- Blank Line -->
| |
| − | <!-- Blank Line -->
| |
| − | <!-- The following uses a template (DoubleTextBox) for simplicity -->
| |
| − | {{ DoubleTextBox
| |
| − | <!-- Left Side Panel -->
| |
| − | | LeftTitle1 = Getting Started: Understanding HPC
| |
| − | | LeftContent1=
| |
| | | | |
| − | New to HPC? The HPC Introduction Page explains the "why" and "how" of high performance computing. Also see the [[:HPRC:Policies | Policies Page]] better understand the rules and etiquette of cluster usage.
| + | '''Ada User's Guide''' |
| | | | |
| − | | LeftTitle2 = Getting Started: Your First Batch Job | + | * [[Ada:Policies | Key Policies]] |
| − | | LeftContent2 = | + | * [[Ada:Intro | Hardware Summary]] |
| | + | * [[Ada:Access | Access]] |
| | + | * [[Ada:Computing_Environment | Computing Environment]] |
| | + | * [[Ada:Filesystems_and_Files | File Systems, Quotas and File Transfers]] |
| | + | * [[Ada:Compile:All | Compiling and Running Programs]] |
| | + | <!-- ** [[Ada:Compile:Intro | Getting Started]] |
| | + | ** [[Ada:Compile:OpenMP | OpenMP Programs]] |
| | + | ** [[Ada:Compile:MPI | MPI Programs]] |
| | + | ** [[Ada:Compile:CUDA | CUDA Programs]] |
| | + | ** [[Ada:Compile:PHI | PHI Programs]] |
| | + | * [[Ada:Debugging | Debugging Programs]] |
| | + | Removing because idb works only with intel 2014 modules --> |
| | + | * [[Ada:Batch | Batch Processing (LSF)]] |
| | + | ** [[Ada:Batch#Introduction | Introduction]] |
| | + | ** [[Ada:Batch#Job_Files | Building Job Files]] |
| | + | ** [[Ada:Batch#Job_Submission | Job Submission]] |
| | + | ** [[Ada:Batch#Job_File_Examples | Job File Examples]] |
| | + | ** [[Ada:Batch#Queues | Batch Queues]] |
| | + | ** [[Ada:Batch#Advanced_Documentation | Advanced Documentation]] |
| | + | * '''Special Purpose Batch Jobs''' |
| | + | ** [[Ada:Remote-Viz | Remote Visualization (Using GUIs)]] |
| | + | ** [[Ada:Tamulauncher | Running a Large Number of Programs (Using Tamulauncher)]] |
| | + | * [[Ada:Numerical_libraries | Numerical Libraries]] |
| | + | ** [[Ada:MKL | Math Kernel Library]] |
| | + | ** [[Ada:NAG | NAG Numerical Libraries]] |
| | + | * [[Ada:Bioinformatics | Bioinformatics Tools]] |
| | + | * [[Ada:Authors | Authors of this Guide]] |
| | | | |
| − | '''Getting an Account''' <br>
| |
| − | The computer systems managed by HPRC are available for use to university faculty, staff, and students who require large-scale computing capabilities. Visit the [[HPRC:Policies:Allocations | Allocation Policy]] page for more information or the [https://sc.tamu.edu/apply/ Account Application] page to apply or renew an account. ''All accounts expire and must be renewed in September of each year.''
| |
| | | | |
| − | '''Quick Start Guides''' <br>
| |
| − | The Ada and Terra Quick Start Guides are available to help new users learn to submit new jobs in a single session.
| |
| − | *[[:Ada:QuickStart | Ada Quick Start Guide]]
| |
| − | *[[:Terra:QuickStart | Terra Quick Start Guide]]
| |
| | | | |
| − | '''Customizing your Batch Jobs''' <br>
| + | [[Category:Ada]] |
| − | Many experienced users have the need to customize their batch job scripts to better suit their workflow.
| |
| − | | |
| − | Ada Batch Pages provide information on LSF job scripts.
| |
| − | * [[:Ada:Batch | Complete Ada Batch Page]]
| |
| − | * [[:Ada:Batch#Job_Submission | Job Submission (bsub)]]
| |
| − | * [[:Ada:Batch#Queues | Ada Queue Structure]]
| |
| − | | |
| − | Terra Batch Pages provide information on SLURM job scripts.
| |
| − | * [[:Terra:Batch | Complete Terra Batch Page]]
| |
| − | * [[:Terra:Batch#Job_Submission | Job Submission (sbatch)]]
| |
| − | * [[:Terra:Batch#Queues | Terra Queue Structure]]
| |
| − | | |
| − | Finally, the [[:HPRC:Batch_Translation | Batch Translation Page]] provides a reference for translating between PBS (Eos), LSF (Ada), and SLURM (Terra).
| |
| − | | |
| − | '''Problems and Solutions''' <br>
| |
| − | While we cannot predict all bugs and errors, some issues are extremely common on our clusters.
| |
| − | | |
| − | See the [[:HPRC:CommonProblems | Common Problems and Quick Solutions Page]] for a small collection of the most prevalent issues.
| |
| − | | |
| − | <!-- Right Side Panel -->
| |
| − | | RightTitle1 = Newest Resource: Terra
| |
| − | | RightContent1 =
| |
| − | | |
| − | [[Image:Terra-racks.jpg|right|275px|Terra]]
| |
| − | Our newest cluster,[[:Terra | Terra]], supplements Ada in providing for the general-compute needs of our users.
| |
| − | | |
| − | [[:Terra | Terra]] features 304 compute nodes each with 28 cores. 64GB and 128GB variants of the compute nodes are available, along with a dual-GPU K80 card on some nodes.
| |
| − | | |
| − | [https://slurm.schedmd.com/ Slurm] is used exclusively to manage the [[:Terra:Batch | Terra]] batch system. The [[HPRC:Batch_Translation | Batch Translation Guide]] is available for converting between Slurm, PBS, and LSF.
| |
| − | | |
| − | More information on [[:Terra | Terra]], the [[:Terra:Intro | hardware configuration]], and the [[:Terra:Batch | Slurm batch system]] can be found within the [[:Terra | Terra User Guide]].
| |
| − | | |
| − | | RightTitle2 = Upcoming Event: Research Computing Week
| |
| − | | RightContent2 =
| |
| − | | |
| − | [[Image:SAVETHEDATERC-4.png|right|350px|Save The Date|HPRC:RCWeek]]
| |
| − | ==== Texas A&M Research Computing Week ====
| |
| − | '''''Dates:''' June 5<sup>th</sup> - 9<sup>th</sup> , 2017''
| |
| − | | |
| − | '''''Location:''' Texas A&M University Campus''
| |
| − | | |
| − | '''''Description:''' Texas A&M High Performance Research Computing is hosting a week-long series of events June 5-9, 2017 to introduce the A&M research community to computing and data resources and expertise available to support research, and, for advanced users, to provide additional training.
| |
| − | | |
| − | The week will start with morning and afternoon workshops on a variety of topics on using local and national research computing resources, and will end with a Symposium on Thursday and Friday presenting talks and posters about best practices in computing and data intensive research, and national perspectives on building cyberinfrastructure capacity in the U.S. A Reception and Poster Session are planned for late Thursday afternoon. ''
| |
| − | | |
| − | | |
| − | '''This event is open to anyone interested.'''
| |
| − | | |
| − | Conference web site: [http://u.tamu.edu/HPRCWeek http://u.tamu.edu/HPRCWeek]
| |
| − | | |
| − | }}
| |
| − | <!-- Blank Line -->
| |
| − | <!-- Blank Line -->
| |
| − | <!-- Links: More Information -->
| |
| − | <!-- Text Box Template (has buffer around it) -->
| |
| − | {{ TextBox
| |
| − | | content = {{TitleBar | align=center | title=Further Reading }}
| |
| − | <div style="column-count:4;-moz-column-count:4;-webkit-column-count:4; font-size:110%;">
| |
| − | * [[:Ada | Ada User Guide]]
| |
| − | * [[:Terra | Terra User Guide]]
| |
| − | * [[:Curie | Curie Guide]]
| |
| − | * [[:HPRCLab | Workstations]]
| |
| − | * [[:Ada:Intro | Ada Hardware]]
| |
| − | * [[:Curie:Intro | Curie Hardware]]
| |
| − | * [[:Terra:Intro | Terra Hardware]]
| |
| − | * [[:HPRC:Systems | Hardware Overview]]
| |
| − | * [[:SW | Software Overview]]
| |
| − | * [[:SW:Modules | Loading Software]]
| |
| − | * [[:SW:License_Checker | Check License Usage]]
| |
| − | * [[:HPRC:Policies:SWLicensing | Install Requests]]
| |
| − | * [[:HPRC:Policies | Usage Policies]]
| |
| − | * [https://hprc.tamu.edu/accounts/apply/ Account Application]
| |
| − | * [https://hprc.tamu.edu/accounts/ams/ Manage SUs (Transfers)]
| |
| − | * [[HPRC:About:Contact#Help_Desk | Contact Us]]
| |
| − | </div>
| |
| − | }}
| |
| − | <!--Blank Line-->
| |
| − | <!--Logo Banner Template-->
| |
| − | {{LogoBanner}}
| |
| − | | |
| − | <!-- Following line DISABLES automatic table of contents -->
| |
| − | <!-- This line is down here to remove blank line up top -->
| |
| − | __NOTOC__
| |
